Publications


Dutta, A., Connors, E., Trinh, R., Erazo, N., Dasarathy, S., Ducklow, H. W., Steinberg, D. K., Schofield, O. M., & Bowman, J. S. (2023). Depth drives the distribution of microbial ecological functions in the coastal western Antarctic Peninsula. Frontiers in Microbiology, 14, 1168507. https://doi.org/10.3389/fmicb.2023.1168507
Dasarathy, S., Russell, L. M., Rodier, S. D., & Bowman, J. S. (2023). Wind‐Driven and Seasonal Effects on Marine Aerosol Production in the Bellingshausen Sea, Antarctica. Geophysical Research Letters, 50(3). https://doi.org/10.1029/2022GL099723
Lawrence, J. D., Mullen, A. D., Bryson, F. E., Chivers, C. J., Hanna, A. M., Plattner, T., Spiers, E. M., Bowman, J. S., Buffo, J. J., Burnett, J. L., Carr, C. E., Dichek, D. J., Hughson, K. H. G., King, W., Glenn Lightsey, E., Ingall, E., McKaig, J., Meister, M. R., Pierson, S., … Schmidt, B. E. (2023). Subsurface Science and Search for Life in Ocean Worlds. The Planetary Science Journal, 4(2), 22. https://doi.org/10.3847/PSJ/aca6ed
Cimino, M. A., Conroy, J. A., Connors, E., Bowman, J., Corso, A., Ducklow, H., Fraser, W., Friedlaender, A., Kim, H. H., Larsen, G. D., Moffat, C., Nichols, R., Pallin, L., Patterson‐Fraser, D., Roberts, D., Roberts, M., Steinberg, D. K., Thibodeau, P., Trinh, R., … Stammerjohn, S. (2023). Long‐term patterns in ecosystem phenology near Palmer Station, Antarctica, from the perspective of the Adélie penguin. Ecosphere, 14(2). https://doi.org/10.1002/ecs2.4417
Chamberlain, E. J., Balmonte, J. P., Torstensson, A., Fong, A. A., Snoeijs-Leijonmalm, P., & Bowman, J. S. (2022). Impacts of sea ice melting procedures on measurements of microbial community structure. Elementa: Science of the Anthropocene, 10(1), 00017. https://doi.org/10.1525/elementa.2022.00017
Wilson, J. M., Erazo, N., Connors, E., Chamberlain, E. J., Clements, S. M., Carter, M. L., Smith, J. E., & Bowman, J. S. (2022). Substantial microbial community shifts in response to an exceptional harmful algal bloom in coastal Southern California. Elementa: Science of the Anthropocene, 10(1), 00088. https://doi.org/10.1525/elementa.2021.00088
Angelopoulos, M., Damm, E., Simões Pereira, P., Abrahamsson, K., Bauch, D., Bowman, J., Castellani, G., Creamean, J., Divine, D. V., Dumitrascu, A., Fons, S. W., Granskog, M. A., Kolabutin, N., Krumpen, T., Marsay, C., Nicolaus, M., Oggier, M., Rinke, A., Sachs, T., … Haas, C. (2022). Deciphering the Properties of Different Arctic Ice Types During the Growth Phase of MOSAiC: Implications for Future Studies on Gas Pathways. Frontiers in Earth Science, 10, 864523. https://doi.org/10.3389/feart.2022.864523
Peixoto, R. S., Voolstra, C. R., Sweet, M., Duarte, C. M., Carvalho, S., Villela, H., Lunshof, J. E., Gram, L., Woodhams, D. C., Walter, J., Roik, A., Hentschel, U., Thurber, R. V., Daisley, B., Ushijima, B., Daffonchio, D., Costa, R., Keller-Costa, T., Bowman, J. S., … Berg, G. (2022). Harnessing the microbiome to prevent global biodiversity loss. Nature Microbiology. https://doi.org/10.1038/s41564-022-01173-1
Buffo, J. J., Brown, E. K., Pontefract, A., Schmidt, B. E., Klempay, B., Lawrence, J., Bowman, J., Grantham, M., Glass, J. B., Plattner, T., Chivers, C., Doran, P., & the OAST Team. (2022). The Bioburden and Ionic Composition of Hypersaline Lake Ices: Novel Habitats on Earth and Their Astrobiological Implications. Astrobiology, ast.2021.0078. https://doi.org/10.1089/ast.2021.0078
Piszkin, L., & Bowman, J. (2022). Extremophile enzyme optimization for low temperature and high salinity are fundamentally incompatible. Extremophiles, 26(1), 11. https://doi.org/10.1007/s00792-021-01254-9
Dutta, A., Goldman, T., Keating, J., Burke, E., Williamson, N., Dirmeier, R., & Bowman, J. S. (2022). Machine learning predicts biogeochemistry from microbial community structure in a complex model system. Microbiology Spectrum, 10(1), 17.
Kim, H. H., Bowman, J. S., Luo, Y. W., Ducklow, H. W., Schofield, O. M., Steinberg, D. K., & Doney, S. C. (2022). Modeling polar marine ecosystem functions guided by bacterial physiological and taxonomic traits. Biogeosciences, 19(1), 117–136. https://doi.org/10.5194/bg-19-117-2022
Toh, T. S., Chong, C. W., Lim, S. Y., Bowman, J., Cirstea, M., Lin, C. H., Chen, C. C., Appel-Cresswell, S., Finlay, B. B., & Tan, A. H. (2022). Gut microbiome in Parkinson’s disease: New insights from meta-analysis. Parkinsonism & Related Disorders, 94, 1–9. https://doi.org/10.1016/j.parkreldis.2021.11.017
Creamean, J. M., Barry, K., Hill, T. C. J., Hume, C., DeMott, P. J., Shupe, M. D., Dahlke, S., Willmes, S., Schmale, J., Beck, I., Hoppe, C. J. M., Fong, A., Chamberlain, E., Bowman, J., Scharien, R., & Persson, O. (2022). Annual cycle observations of aerosols capable of ice formation in central Arctic clouds. Nature Communications, 13(1), 3537. https://doi.org/10.1038/s41467-022-31182-x
Dutta, A., Valle, F., Goldman, T., Keating, J., Burke, E., Williamson, N., Dirmeier, R., & Bowman, J. S. (2021). Detection of sulfate-reducing bacteria as an indicator for successful mitigation of sulfide production. Applied and Environmental Microbiology, 87(23), 18. https://doi.org/10.1128/aem.01748-21
Dasarathy, S., Kar, J., Tackett, J., Rodier, S. D., Lu, X., Vaughan, M., Toth, T. D., Trepte, C., & Bowman, J. S. (2021). Multi-year seasonal trends in sea ice, chlorophyll concentration, and marine aerosol optical depth in the Bellingshausen Sea. Journal of Geophysical Research-Atmospheres, 126(21), 19. https://doi.org/10.1029/2021jd034737
Steiner, N. S., Bowman, J., Campbell, K., Chierici, M., Eronen-Rasimus, E., Falardeau, M., Flores, H., Fransson, A., Herr, H., Insley, S. J., Kauko, H. M., Lannuzel, D., Loseto, L., Lynnes, A., Majewski, A., Meiners, K. M., Miller, L. A., Michel, L. N., Moreau, S., … Wongpan, P. (2021). Climate change impacts on sea-ice ecosystems and associated ecosystem services. Elementa-Science of the Anthropocene, 9(1), 55. https://doi.org/10.1525/elementa.2021.00007
Brown, M. S., Bowman, J. S., Lin, Y. J., Feehan, C. J., Moreno, C. M., Cassar, N., Marchetti, A., & Schofield, O. M. (2021). Low diversity of a key phytoplankton group along the West Antarctic Peninsula. Limnology and Oceanography. https://doi.org/10.1002/lno.11765
Wilson, J. M., Chamberlain, E. J., Erazo, N., Carter, M. L., & Bowman, J. S. (2021). Recurrent microbial community types driven by nearshore and seasonal processes in coastal Southern California. Environmental Microbiology. https://doi.org/10.1111/1462-2920.15548
Klempay, B., Arandia-Gorostidi, N., Dekas, A. E., Bartlett, D. H., Carr, C. E., Doran, P. T., Dutta, A., Erazo, N., Fisher, L. A., Glass, J. B., Pontefract, A., Som, S. M., Wilson, J. M., Schmidt, B. E., & Bowman, J. S. (2021). Microbial diversity and activity in Southern California salterns and bitterns: analogues for remnant ocean worlds. Environmental Microbiology. https://doi.org/10.1111/1462-2920.15440
Erazo, N. G., & Bowman, J. S. (2021). Sensitivity of the mangrove-estuarine microbial community to aquaculture effluent. Iscience, 24(3). https://doi.org/10.1016/j.isci.2021.102204
Tan, A. H., Chong, C. W., Lim, S. Y., Yap, I. K. S., Teh, C. S. J., Loke, M. F., Song, S. L., Tan, J. Y., Ang, B. H., Tan, Y. Q., Kho, M. T., Bowman, J., Mahadeva, S., Yong, H. S., & Lang, A. E. (2021). Gut microbial ecosystem in Parkinson disease: New clinicobiological insights from multi-omics. Annals of Neurology, 89(3), 546–559. https://doi.org/10.1002/ana.25982
Bowman, J. S., Van Mooy, B. A. S., Lowenstein, D. P., Fredricks, H. F., Hansel, C. M., Gast, R., Collins, J. R., Couto, N., & Ducklow, H. W. (2021). Whole community metatranscriptomes and lipidomes reveal diverse responses among Antarctic phytoplankton to changing ice conditions. Frontiers in Marine Science, 8. https://doi.org/10.3389/fmars.2021.593566
Wilson, J. M., Carter, M. L., Muhle, J., & Bowman, J. S. (2020). Using empirical dynamic modeling to assess relationships between atmospheric trace gases and eukaryotic phytoplankton populations in coastal Southern California. Marine Chemistry, 227. https://doi.org/10.1016/j.marchem.2020.103896
Dutta, A., Smith, B., Goldman, T., Walker, L., Streets, M., Eden, B., Dirmeier, R., & Bowman, J. S. (2020). Understanding microbial community dynamics in up-flow bioreactors to improve mitigation strategies for oil souring. Frontiers in Microbiology, 11. https://doi.org/10.3389/fmicb.2020.585943
Lannuzel, D., Tedesco, L., van Leeuwe, M., Campbell, K., Flores, H., Delille, B., Miller, L., Stefels, J., Assmy, P., Bowman, J., Brown, K., Castellani, G., Chierici, M., Crabeck, O., Damm, E., Else, B., Fransson, A., Fripiat, F., Geilfus, N. X., … Wongpan, P. (2020). The future of Arctic sea-ice biogeochemistry and ice-associated ecosystems. Nature Climate Change, 10(11), 983–992. https://doi.org/10.1038/s41558-020-00940-4
Neumann, B., Mikoleit, A., Bowman, J. S., Ducklow, H. W., & Muller, F. (2019). Ecosystem service supply in the Antarctic peninsula region: Evaluating an expert-based assessment approach and a novel seascape data model. Frontiers in Environmental Science, 7. https://doi.org/10.3389/fenvs.2019.00157
Sutherland, K. M., Coe, A., Gast, R. J., Plummer, S., Suffridge, C. P., Diaz, J. M., Bowman, J. S., Wankel, S. D., & Hansel, C. M. (2019). Extracellular superoxide production by key microbes in the global ocean. Limnology and Oceanography. https://doi.org/10.1002/lno.11247
Webb, S. J., Rabsattt, T., Erazo, N., & Bowman, J. S. (2019). Impacts of Zostera eelgrasses on microbial community structure in San Diego coastal waters. Elementa-Science of the Anthropocene, 7. https://doi.org/10.1525/elementa.350
Hendrix, A. R., Hurford, T. A., Barge, L. M., Bland, M. T., Bowman, J. S., Brinckerhoff, W., Buratti, B. J., Cable, M. L., Castillo-Rogez, J., Collins, G. C., Diniega, S., German, C. R., Hayes, A. G., Hoehler, T., Hosseini, S., Howett, C. J. A., McEwen, A. S., Neish, C. D., Neveu, M., … Vance, S. D. (2019). The NASA Roadmap to Ocean Worlds. Astrobiology, 19(1), 1–27. https://doi.org/10.1089/ast.2018.1955
Bowman, J. S. (2018). Identification of microbial dark matter in Antarctic environments. Frontiers in Microbiology, 9. https://doi.org/10.3389/fmicb.2018.03165
Bowman, J. S., Kavanaugh, M. T., Doney, S. C., & Ducklow, H. W. (2018). Recurrent seascape units identify key ecological processes along the western Antarctic Peninsula. Global Change Biology, 24(7), 3065–3078. https://doi.org/10.1111/gcb.14161
Collins, J. R., Fredricks, H. F., Bowman, J. S., Ward, C. P., Moreno, C., Longnecker, K., Marchetti, A., Hansel, C. M., Ducklow, H. W., & Van Mooy, B. A. S. (2018). The molecular products and biogeochemical significance of lipid photooxidation in West Antarctic surface waters. Geochimica Et Cosmochimica Acta, 232, 244–264. https://doi.org/10.1016/j.gca.2018.04.030
Arfken, A., Song, B., Bowman, J. S., & Piehler, M. (2017). Denitrification potential of the eastern oyster microbiome using a 16S rRNA gene based metabolic inference approach. PLOS ONE, 12(9). https://doi.org/10.1371/journal.pone.0185071
Bowman, J. S., Amaral-Zettler, L. A., Rich, J. J., Luria, C. M., & Ducklow, H. W. (2017). Bacterial community segmentation facilitates the prediction of ecosystem function along the coast of the western Antarctic Peninsula. Isme Journal, 11(6), 1460–1471. https://doi.org/10.1038/ismej.2016.204
Bowman, J. S., & Deming, J. W. (2017). Wind-driven distribution of bacteria in coastal Antarctica: evidence from the Ross Sea region. Polar Biology, 40(1), 25–35. https://doi.org/10.1007/s00300-016-1921-2
Bowman, J. S., Vick-Majors, T. J., Morgan-Kiss, R., Takacs-Vesbach, C., Ducklow, H. W., & Priscu, J. C. (2016). Microbial community dynamics in two polar extremes: The lakes of the McMurdo dry valleys and the West Antarctic Peninsula marine ecosystem. Bioscience, 66(10), 829–847. https://doi.org/10.1093/biosci/biw103
Domagal-Goldman, S. D., Wright, K. E., Adamala, K., {Arina de la Rubia}, L., Bond, J., Dartnell, L. R., Goldman, A. D., Lynch, K., Naud, M.-E., Paulino-Lima, I. G., Singer, K., Walter-Antonio, M., Abrevaya, X. C., Anderson, R., Arney, G., Atri, D., Azúa-Bustos, A., Bowman, J. S., Brazelton, W. J., … Wong, T. (2016). The Astrobiology Primer v2.0. Astrobiology, 16(8), 561–653. https://doi.org/10.1089/ast.2015.1460
Miller LA, Fripiat F, Else BG, Bowman JS, Brown KA, Collins, R. E., Ewert, M., Meiners, K. M., Michel, C., Nishioka, J., Nomura, D., Papadimitriou, S., Russell, L. M., Sorenson, L., Thomas, D., Tison, J., van Leeuwe, M., Vancoppenolle, M., Wolff, E., & Zhou, J. (2015). Methods for biogeochemical studies of sea ice: The state of the art, caveats, and recommendations. Elem. Sci. Anth., 3. https://doi.org/10.12952/journal.elementa.000038
Bowman, J. S. (2015). The relationship between sea ice bacterial community structure and biogeochemistry: A synthesis of current knowledge and known unknowns. Elementa, 3, 1–20. https://doi.org/10.12952/journal.elementa.000072
Bowman, J. S., & Ducklow, H. W. (2015). Microbial Communities Can Be Described by Metabolic Structure: A General Framework and Application to a Seasonally Variable, Depth-Stratified Microbial Community from the Coastal West Antarctic Peninsula. PLOS ONE, 10(8), e0135868. https://doi.org/10.1371/journal.pone.0135868
Bowman, J. S., & Deming, J. W. (2014). Alkane hydroxylase genes in psychrophile genomes and the potential for cold active catalysis. Bmc Genomics, 15(1), 1120. https://doi.org/10.1186/1471-2164-15-1120
Barber, D. G., Ehn, J. K., Pućko, M., Rysgaard, S., Deming, J. W., Bowman, J. S., Papakyriakou, T., Galley, R. J., & Søgaard, D. H. (2014). Frost flowers on young Arctic sea ice: The climatic, chemical, and microbial significance of an emerging ice type. Journal of Geophysical Research: Atmospheres, 119(20), 11,593-11,612. https://doi.org/10.1002/2014JD021736
Bowman, J. S., Berthiaume, C. T., Armbrust, E. V., & Deming, J. W. (2014). The genetic potential for key biogeochemical processes in Arctic frost flowers and young sea ice revealed by metagenomic analysis. FEMS Microbiology Ecology, 89(2), 376–387. https://doi.org/10.1111/1574-6941.12331
Bowman, J. S., Larose, C., Vogel, T. M., & Deming, J. W. (2013). Selective occurrence of Rhizobiales in frost flowers on the surface of young sea ice near Barrow, Alaska and distribution in the polar marine rare biosphere. Environmental Microbiology Reports, 5(4), 575–582. https://doi.org/10.1111/1758-2229.12047
Stüeken, E. E., Anderson, R. E., Bowman, J. S., Brazelton, W. J., Colangelo-Lillis, J., Goldman, A. D., Som, S. M., & Baross, J. A. (2013). Did life originate from a global chemical reactor? Geobiology, 11(2), 101–126. https://doi.org/10.1111/gbi.12025
Bowman, J. S., Rasmussen, S., Blom, N., Deming, J. W., Rysgaard, S., & Sicheritz-Ponten, T. (2012). Microbial community structure of Arctic multiyear sea ice and surface seawater by 454 sequencing of the 16S RNA gene. Isme Journal, 6(1), 11–20.
Bowman, J. S., & Deming, J. W. (2010). Elevated bacterial abundance and exopolymers in saline frost flowers and implications for atmospheric chemistry and microbial dispersal. Geophysical Research Letters, 37(13), n/a-n/a. https://doi.org/10.1029/2010GL043020
Bowman, J. S., & Sachs, J. P. (2008). Chemical and physical properties of some saline lakes in Alberta and Saskatchewan. Saline Systems, 4(1), 3. https://doi.org/10.1186/1746-1448-4-3