Demmel, M. Y., Wall, C. B., Spiegel, C. J., Erazo, N., Diaz, E. M., Perreault, M. G., Perez‐Coronel, E., Jackrel, S. L., Bowman, J. S., & Shurin, J. B. (2025). Wildfire‐Driven Changes in Terrestrial Subsidies Shift Freshwater Microbial and Zooplankton Communities to New Compositional States. Molecular Ecology, e17794. https://doi.org/10.1111/mec.17794

Fisher, L. A., Dangre, S. R., Odenheimer, A., Patel, N., Doran, P. T., Bowman, J. S., Schmidt, B. E., & Bartlett, D. H. (2025). Dethiothermospora halolimnae gen. nov., sp. nov., a novel moderately halophilic, thermotolerant, bacterium isolated from a brine lake. International Journal of Systematic and Evolutionary Microbiology, 75(4). https://doi.org/10.1099/ijsem.0.006760

Adams, H. M., Wu, P., Kübler-Dudgeon, I., Lamborg, C. H., Bowman, J. S., & Schartup, A. T. (2025). Coastal inorganic mercury time series reveals interannual and seasonal variability driven by regional climate factors. Communications Earth & Environment, 6(1), 293. https://doi.org/10.1038/s43247-025-02263-8

Weng, M. M., Klempay, B., Bowman, J. S., Fisher, L., Camplong, C., Doran, P. T., Rundell, S., Glass, J. B., Dutta, A., Pontefract, A., Bartlett, D. H., Schmidt, B., & Johnson, S. S. (2025). Light cues drive community-wide transcriptional shifts in the hypersaline South Bay Salt Works. Communications Biology, 8(1), 450. https://doi.org/10.1038/s42003-025-07855-w

Connors, E., Gallagher, K. L., Dutta, A., Oliver, M., & Bowman, J. S. (2025). Suspended detrital particles support a distinct microbial ecosystem in Palmer Canyon, Antarctica, a coastal biological hotspot. Polar Biology, 48(2), 62. https://doi.org/10.1007/s00300-025-03380-y

Fong, A. A., Hoppe, C. J. M., Aberle, N., Ashjian, C. J., Assmy, P., Bai, Y., Bakker, D. C. E., Balmonte, J. P., Barry, K. R., Bertilsson, S., Boulton, W., Bowman, J., Bozzato, D., Bratbak, G., Buck, M., Campbell, R. G., Castellani, G., Chamberlain, E. J., Chen, J., … Gradinger, R. R. (2024). Overview of the MOSAiC expedition: Ecosystem. Elem Sci Anth, 12(1), 00135. https://doi.org/10.1525/elementa.2023.00135

Pozarycki, C., Seaton, K. M., C. Vincent, E., Novak Sanders, C., Nuñez, N., Castillo, M., Ingall, E., Klempay, B., Pontefract, A., Fisher, L. A., Paris, E. R., Buessecker, S., Alansson, N. B., Carr, C. E., Doran, P. T., Bowman, J. S., Schmidt, B. E., & Stockton, A. M. (2024). Biosignature Molecules Accumulate and Persist in Evaporitic Brines: Implications for Planetary Exploration. Astrobiology, 24(8), 795–812. https://doi.org/10.1089/ast.2023.0122

Hsiao, V., Erazo, N. G., Reef, R., Lovelock, C., & Bowman, J. (2024). Forest zone and root compartments outweigh long-term nutrient enrichment in structuring arid mangrove root microbiomes. Frontiers in Forests and Global Change, 7, 1336037. https://doi.org/10.3389/ffgc.2024.1336037

Som, S. M., Sevgen, S., Suttle, A. A., Bowman, J. S., & Schmidt, B. E. (2024). Thermodynamic Predictions of Hydrogen Generation during the Serpentinization of Harzburgite with Seawater-derived Brines. The Planetary Science Journal, 5(6), 151. https://doi.org/10.3847/PSJ/ad42a1

Dan, M. E., Portner, E. J., Bowman, J. S., Semmens, B. X., Owens, S. M., Greenwald, S. M., & Choy, C. A. (2024). Using low volume eDNA methods to sample pelagic marine animal assemblages. PLOS ONE, 19(5), e0303263. https://doi.org/10.1371/journal.pone.0303263

Connors, E., Dutta, A., Trinh, R., Erazo, N., Dasarathy, S., Ducklow, H., Weissman, J. L., Yeh, Y.-C., Schofield, O., Steinberg, D., Fuhrman, J., & Bowman, J. S. (2024). Microbial community composition predicts bacterial production across ocean ecosystems. The ISME Journal, 18(1), wrae158. https://doi.org/10.1093/ismejo/wrae158

Connors, E., Lebreton, L., Bowman, J. S., & Royer, S. (2024). Changes in microbial community structure of bio‐fouled polyolefins over a year‐long seawater incubation in Hawai’i. Environmental Microbiology Reports, 16(4), e13283. https://doi.org/10.1111/1758-2229.13283

Paris, E. R., Arandia-Gorostidi, N., Klempay, B., Bowman, J. S., Pontefract, A., Elbon, C. E., Glass, J. B., Ingall, E. D., Doran, P. T., Som, S. M., Schmidt, B. E., & Dekas, A. E. (2023). Single-cell analysis in hypersaline brines predicts a water-activity limit of microbial anabolic activity. Science Advances, 9(51), eadj3594. https://doi.org/10.1126/sciadv.adj3594

Ortmann, A. C., Goodwin, K. D., Bolhuis, H., Groben, R., Makhalanyane, T., Bowman, J., Robinson, S., & Thompson, F. (2023). Catalyzing progress in the blue economy through joint marine microbiome research across the Atlantic. Frontiers in Marine Science, 10, 1327719. https://doi.org/10.3389/fmars.2023.1327719

Smith, M. M., Angot, H., Chamberlain, E. J., Droste, E. S., Karam, S., Muilwijk, M., Webb, A. L., Archer, S. D., Beck, I., Blomquist, B. W., Bowman, J., Boyer, M., Bozzato, D., Chierici, M., Creamean, J., D’Angelo, A., Delille, B., Fer, I., Fong, A. A., … Zhan, L. (2023). Thin and transient meltwater layers and false bottoms in the Arctic sea ice pack—Recent insights on these historically overlooked features. Elem Sci Anth, 11(1), 00025. https://doi.org/10.1525/elementa.2023.00025

Dutta, A., Connors, E., Trinh, R., Erazo, N., Dasarathy, S., Ducklow, H. W., Steinberg, D. K., Schofield, O. M., & Bowman, J. S. (2023). Depth drives the distribution of microbial ecological functions in the coastal western Antarctic Peninsula. Frontiers in Microbiology, 14, 1168507. https://doi.org/10.3389/fmicb.2023.1168507

Dasarathy, S., Russell, L. M., Rodier, S. D., & Bowman, J. S. (2023). Wind‐Driven and Seasonal Effects on Marine Aerosol Production in the Bellingshausen Sea, Antarctica. Geophysical Research Letters, 50(3). https://doi.org/10.1029/2022GL099723

Lawrence, J. D., Mullen, A. D., Bryson, F. E., Chivers, C. J., Hanna, A. M., Plattner, T., Spiers, E. M., Bowman, J. S., Buffo, J. J., Burnett, J. L., Carr, C. E., Dichek, D. J., Hughson, K. H. G., King, W., Glenn Lightsey, E., Ingall, E., McKaig, J., Meister, M. R., Pierson, S., … Schmidt, B. E. (2023). Subsurface Science and Search for Life in Ocean Worlds. The Planetary Science Journal, 4(2), 22. https://doi.org/10.3847/PSJ/aca6ed

Dawson, H. M., Connors, E., Erazo, N. G., Sacks, J. S., Mierzejewski, V., Rundell, S. M., Carlson, L. T., Deming, J. W., Ingalls, A. E., Bowman, J. S., & Young, J. N. (2023). Microbial metabolomic responses to changes in temperature and salinity along the western Antarctic Peninsula. The ISME Journal, 17(11), 2035–2046. https://doi.org/10.1038/s41396-023-01475-0

Cimino, M. A., Conroy, J. A., Connors, E., Bowman, J., Corso, A., Ducklow, H., Fraser, W., Friedlaender, A., Kim, H. H., Larsen, G. D., Moffat, C., Nichols, R., Pallin, L., Patterson‐Fraser, D., Roberts, D., Roberts, M., Steinberg, D. K., Thibodeau, P., Trinh, R., … Stammerjohn, S. (2023). Long‐term patterns in ecosystem phenology near Palmer Station, Antarctica, from the perspective of the Adélie penguin. Ecosphere, 14(2). https://doi.org/10.1002/ecs2.4417

Kutner, D. S., Bowman, J. S., Saldanha-Corrêa, F. M. P., Chuqui, M. G., Tura, P. M., Moreira, D. L., Brandini, F. P., & Signori, C. N. (2023). Inorganic carbon assimilation by planktonic community in Santos Basin, Southwestern Atlantic Ocean. Ocean and Coastal Research, 71(suppl 3), e23006. https://doi.org/10.1590/2675-2824071.22085dsk

Chamberlain, E. J., Balmonte, J. P., Torstensson, A., Fong, A. A., Snoeijs-Leijonmalm, P., & Bowman, J. S. (2022). Impacts of sea ice melting procedures on measurements of microbial community structure. Elementa: Science of the Anthropocene, 10(1), 00017. https://doi.org/10.1525/elementa.2022.00017

Wilson, J. M., Erazo, N., Connors, E., Chamberlain, E. J., Clements, S. M., Carter, M. L., Smith, J. E., & Bowman, J. S. (2022). Substantial microbial community shifts in response to an exceptional harmful algal bloom in coastal Southern California. Elementa: Science of the Anthropocene, 10(1), 00088. https://doi.org/10.1525/elementa.2021.00088

Angelopoulos, M., Damm, E., Simões Pereira, P., Abrahamsson, K., Bauch, D., Bowman, J., Castellani, G., Creamean, J., Divine, D. V., Dumitrascu, A., Fons, S. W., Granskog, M. A., Kolabutin, N., Krumpen, T., Marsay, C., Nicolaus, M., Oggier, M., Rinke, A., Sachs, T., … Haas, C. (2022). Deciphering the Properties of Different Arctic Ice Types During the Growth Phase of MOSAiC: Implications for Future Studies on Gas Pathways. Frontiers in Earth Science, 10, 864523. https://doi.org/10.3389/feart.2022.864523

Peixoto, R. S., Voolstra, C. R., Sweet, M., Duarte, C. M., Carvalho, S., Villela, H., Lunshof, J. E., Gram, L., Woodhams, D. C., Walter, J., Roik, A., Hentschel, U., Thurber, R. V., Daisley, B., Ushijima, B., Daffonchio, D., Costa, R., Keller-Costa, T., Bowman, J. S., … Berg, G. (2022). Harnessing the microbiome to prevent global biodiversity loss. Nature Microbiology. https://doi.org/10.1038/s41564-022-01173-1

Buffo, J. J., Brown, E. K., Pontefract, A., Schmidt, B. E., Klempay, B., Lawrence, J., Bowman, J., Grantham, M., Glass, J. B., Plattner, T., Chivers, C., Doran, P., & the OAST Team. (2022). The Bioburden and Ionic Composition of Hypersaline Lake Ices: Novel Habitats on Earth and Their Astrobiological Implications. Astrobiology, ast.2021.0078. https://doi.org/10.1089/ast.2021.0078

Piszkin, L., & Bowman, J. (2022). Extremophile enzyme optimization for low temperature and high salinity are fundamentally incompatible. Extremophiles, 26(1), 11. https://doi.org/10.1007/s00792-021-01254-9

Dutta, A., Goldman, T., Keating, J., Burke, E., Williamson, N., Dirmeier, R., & Bowman, J. S. (2022). Machine learning predicts biogeochemistry from microbial community structure in a complex model system. Microbiology Spectrum, 10(1), 17.

Kim, H. H., Bowman, J. S., Luo, Y. W., Ducklow, H. W., Schofield, O. M., Steinberg, D. K., & Doney, S. C. (2022). Modeling polar marine ecosystem functions guided by bacterial physiological and taxonomic traits. Biogeosciences, 19(1), 117–136. https://doi.org/10.5194/bg-19-117-2022

Toh, T. S., Chong, C. W., Lim, S. Y., Bowman, J., Cirstea, M., Lin, C. H., Chen, C. C., Appel-Cresswell, S., Finlay, B. B., & Tan, A. H. (2022). Gut microbiome in Parkinson’s disease: New insights from meta-analysis. Parkinsonism & Related Disorders, 94, 1–9. https://doi.org/10.1016/j.parkreldis.2021.11.017

Creamean, J. M., Barry, K., Hill, T. C. J., Hume, C., DeMott, P. J., Shupe, M. D., Dahlke, S., Willmes, S., Schmale, J., Beck, I., Hoppe, C. J. M., Fong, A., Chamberlain, E., Bowman, J., Scharien, R., & Persson, O. (2022). Annual cycle observations of aerosols capable of ice formation in central Arctic clouds. Nature Communications, 13(1), 3537. https://doi.org/10.1038/s41467-022-31182-x

Dutta, A., Valle, F., Goldman, T., Keating, J., Burke, E., Williamson, N., Dirmeier, R., & Bowman, J. S. (2021). Detection of sulfate-reducing bacteria as an indicator for successful mitigation of sulfide production. Applied and Environmental Microbiology, 87(23), 18. https://doi.org/10.1128/aem.01748-21

Dasarathy, S., Kar, J., Tackett, J., Rodier, S. D., Lu, X., Vaughan, M., Toth, T. D., Trepte, C., & Bowman, J. S. (2021). Multi-year seasonal trends in sea ice, chlorophyll concentration, and marine aerosol optical depth in the Bellingshausen Sea. Journal of Geophysical Research-Atmospheres, 126(21), 19. https://doi.org/10.1029/2021jd034737

Steiner, N. S., Bowman, J., Campbell, K., Chierici, M., Eronen-Rasimus, E., Falardeau, M., Flores, H., Fransson, A., Herr, H., Insley, S. J., Kauko, H. M., Lannuzel, D., Loseto, L., Lynnes, A., Majewski, A., Meiners, K. M., Miller, L. A., Michel, L. N., Moreau, S., … Wongpan, P. (2021). Climate change impacts on sea-ice ecosystems and associated ecosystem services. Elementa-Science of the Anthropocene, 9(1), 55. https://doi.org/10.1525/elementa.2021.00007

Brown, M. S., Bowman, J. S., Lin, Y. J., Feehan, C. J., Moreno, C. M., Cassar, N., Marchetti, A., & Schofield, O. M. (2021). Low diversity of a key phytoplankton group along the West Antarctic Peninsula. Limnology and Oceanography. https://doi.org/10.1002/lno.11765

Wilson, J. M., Chamberlain, E. J., Erazo, N., Carter, M. L., & Bowman, J. S. (2021). Recurrent microbial community types driven by nearshore and seasonal processes in coastal Southern California. Environmental Microbiology. https://doi.org/10.1111/1462-2920.15548

Klempay, B., Arandia-Gorostidi, N., Dekas, A. E., Bartlett, D. H., Carr, C. E., Doran, P. T., Dutta, A., Erazo, N., Fisher, L. A., Glass, J. B., Pontefract, A., Som, S. M., Wilson, J. M., Schmidt, B. E., & Bowman, J. S. (2021). Microbial diversity and activity in Southern California salterns and bitterns: analogues for remnant ocean worlds. Environmental Microbiology. https://doi.org/10.1111/1462-2920.15440

Erazo, N. G., & Bowman, J. S. (2021). Sensitivity of the mangrove-estuarine microbial community to aquaculture effluent. Iscience, 24(3). https://doi.org/10.1016/j.isci.2021.102204

Tan, A. H., Chong, C. W., Lim, S. Y., Yap, I. K. S., Teh, C. S. J., Loke, M. F., Song, S. L., Tan, J. Y., Ang, B. H., Tan, Y. Q., Kho, M. T., Bowman, J., Mahadeva, S., Yong, H. S., & Lang, A. E. (2021). Gut microbial ecosystem in Parkinson disease: New clinicobiological insights from multi-omics. Annals of Neurology, 89(3), 546–559. https://doi.org/10.1002/ana.25982

Bowman, J. S., Van Mooy, B. A. S., Lowenstein, D. P., Fredricks, H. F., Hansel, C. M., Gast, R., Collins, J. R., Couto, N., & Ducklow, H. W. (2021). Whole community metatranscriptomes and lipidomes reveal diverse responses among Antarctic phytoplankton to changing ice conditions. Frontiers in Marine Science, 8. https://doi.org/10.3389/fmars.2021.593566

Wilson, J. M., Carter, M. L., Muhle, J., & Bowman, J. S. (2020). Using empirical dynamic modeling to assess relationships between atmospheric trace gases and eukaryotic phytoplankton populations in coastal Southern California. Marine Chemistry, 227. https://doi.org/10.1016/j.marchem.2020.103896

Dutta, A., Smith, B., Goldman, T., Walker, L., Streets, M., Eden, B., Dirmeier, R., & Bowman, J. S. (2020). Understanding microbial community dynamics in up-flow bioreactors to improve mitigation strategies for oil souring. Frontiers in Microbiology, 11. https://doi.org/10.3389/fmicb.2020.585943

Lannuzel, D., Tedesco, L., van Leeuwe, M., Campbell, K., Flores, H., Delille, B., Miller, L., Stefels, J., Assmy, P., Bowman, J., Brown, K., Castellani, G., Chierici, M., Crabeck, O., Damm, E., Else, B., Fransson, A., Fripiat, F., Geilfus, N. X., … Wongpan, P. (2020). The future of Arctic sea-ice biogeochemistry and ice-associated ecosystems. Nature Climate Change, 10(11), 983–992. https://doi.org/10.1038/s41558-020-00940-4

Neumann, B., Mikoleit, A., Bowman, J. S., Ducklow, H. W., & Muller, F. (2019). Ecosystem service supply in the Antarctic peninsula region: Evaluating an expert-based assessment approach and a novel seascape data model. Frontiers in Environmental Science, 7. https://doi.org/10.3389/fenvs.2019.00157

Sutherland, K. M., Coe, A., Gast, R. J., Plummer, S., Suffridge, C. P., Diaz, J. M., Bowman, J. S., Wankel, S. D., & Hansel, C. M. (2019). Extracellular superoxide production by key microbes in the global ocean. Limnology and Oceanography. https://doi.org/10.1002/lno.11247

Webb, S. J., Rabsattt, T., Erazo, N., & Bowman, J. S. (2019). Impacts of Zostera eelgrasses on microbial community structure in San Diego coastal waters. Elementa-Science of the Anthropocene, 7. https://doi.org/10.1525/elementa.350

Hendrix, A. R., Hurford, T. A., Barge, L. M., Bland, M. T., Bowman, J. S., Brinckerhoff, W., Buratti, B. J., Cable, M. L., Castillo-Rogez, J., Collins, G. C., Diniega, S., German, C. R., Hayes, A. G., Hoehler, T., Hosseini, S., Howett, C. J. A., McEwen, A. S., Neish, C. D., Neveu, M., … Vance, S. D. (2019). The NASA Roadmap to Ocean Worlds. Astrobiology, 19(1), 1–27. https://doi.org/10.1089/ast.2018.1955

Bowman, J. S. (2018). Identification of microbial dark matter in Antarctic environments. Frontiers in Microbiology, 9. https://doi.org/10.3389/fmicb.2018.03165

Bowman, J. S., Kavanaugh, M. T., Doney, S. C., & Ducklow, H. W. (2018). Recurrent seascape units identify key ecological processes along the western Antarctic Peninsula. Global Change Biology, 24(7), 3065–3078. https://doi.org/10.1111/gcb.14161

Collins, J. R., Fredricks, H. F., Bowman, J. S., Ward, C. P., Moreno, C., Longnecker, K., Marchetti, A., Hansel, C. M., Ducklow, H. W., & Van Mooy, B. A. S. (2018). The molecular products and biogeochemical significance of lipid photooxidation in West Antarctic surface waters. Geochimica Et Cosmochimica Acta, 232, 244–264. https://doi.org/10.1016/j.gca.2018.04.030